2KIO
NMR structure of the oxidized yeast TOR1 FATC domain bound to DPC micelles at 318K
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
2 | 2D 1H-13C HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
3 | 2D 1H-15N HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
4 | 2D 1H-13C HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
5 | 3D HNCA | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
6 | 3D HCCH-TOCSY | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
7 | 3D 1H-15N NOESY | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
8 | 3D 1H-13C NOESY | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
9 | 3D 1H-13C NOESY | 0.40 mM [U-13C; U-15N] y1fatc-2 | 150 | 6.5 | ambient | 318 | ||
10 | 3D HNHB | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
11 | 13C'-{13Cg} SED 1H-15N HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
12 | 15N-{13Cg} SED 1H-15N HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
13 | {15N} SED 1H-13C HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
14 | {13C'} SED 1H-13C HSQC | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
15 | 15N T1 | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
16 | 15N T2 | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 | ||
17 | {1H}-15N-NOE | 0.40-0.46 mM [U-13C; U-15N] y1fatc-1 | 150 | 6.5 | ambient | 318 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, simulated annealing | X-PLOR_NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR_NIH | 2.16.0 | Schwieters, Kuszewski, Tjandra and Clore |
2 | chemical shift assignment | NMRView | 5.2.2_01 | Johnson, One Moon Scientific |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | structure analysis | ProcheckNMR | Laskowski and MacArthur | |
6 | structure visualization | Molmol | Koradi, Billeter and Wuthrich | |
7 | processing | xwinnmr | 3.5 | Bruker Biospin |
8 | analysis of 15n relaxation data | TENSOR2 | 2 | P. Dosset, D. Marion, M. Blackledge |
9 | refinement | X-PLOR_NIH | 2.16.0 | Schwieters, Kuszewski, Tjandra and Clore |