2KI7

The solution structure of RPP29-RPP21 complex from Pyrococcus furiosus


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-990% H2O/10% D2O0.0475.8ambient328
22D 1H-15N HSQC1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-2690% H2O/10% D2O0.0475.8ambient328
32D 1H-13C HSQC1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-990% H2O/10% D2O0.0475.8ambient328
42D 1H-13C HSQC1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-2690% H2O/10% D2O0.0475.8ambient328
53D HNCO1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-990% H2O/10% D2O0.0475.8ambient328
63D HNCO1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-2690% H2O/10% D2O0.0475.8ambient328
73D HNCACB1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-990% H2O/10% D2O0.0475.8ambient328
83D HNCACB1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-2690% H2O/10% D2O0.0475.8ambient328
93D CBCA(CO)NH1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-990% H2O/10% D2O0.0475.8ambient328
103D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-2690% H2O/10% D2O0.0475.8ambient328
113D C(CO)NH TOCSY1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-990% H2O/10% D2O0.0475.8ambient328
123D C(CO)NH TOCSY1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-2690% H2O/10% D2O0.0475.8ambient328
133D H(C)(CO)NH TOCSY1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-990% H2O/10% D2O0.0475.8ambient328
143D H(C)(CO)NH TOCSY1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-2690% H2O/10% D2O0.0475.8ambient328
153D 1H-15N NOESY1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-990% H2O/10% D2O0.0475.8ambient328
163D 1H-15N NOESY1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-2690% H2O/10% D2O0.0475.8ambient328
173D 1H-13C NOESY1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-10, 1.5 mM Pfu RPP21-11, 10 mM TRIS-12, 10 mM potassium chloride-13, 0.3 % Zinc chloride-14, 0.02 % sodium azide-15, 100 % [U-99.8% 2H] D2O-16, 3 mM DSS-17100% D2O0.047ambient328
183D 1H-13C NOESY1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-27, 1.2 mM Pfu RPP29-28, 10 mM TRIS-29, 10 mM potassium chloride-30, 0.3 mM Zinc chloride-31, 0.02 % sodium azide-32, 100 % [U-99.8% 2H] D2O-33, 3 mM DSS-34100% D2O0.047ambient328
193D 13C-filtered/edited NOESY1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-10, 1.5 mM Pfu RPP21-11, 10 mM TRIS-12, 10 mM potassium chloride-13, 0.3 % Zinc chloride-14, 0.02 % sodium azide-15, 100 % [U-99.8% 2H] D2O-16, 3 mM DSS-17100% D2O0.047ambient328
203D 13C-filtered/edited NOESY1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-27, 1.2 mM Pfu RPP29-28, 10 mM TRIS-29, 10 mM potassium chloride-30, 0.3 mM Zinc chloride-31, 0.02 % sodium azide-32, 100 % [U-99.8% 2H] D2O-33, 3 mM DSS-34100% D2O0.047ambient328
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX600
2BrukerDRX800
NMR Refinement
MethodDetailsSoftware
simulated annealingNMRDraw
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2chemical shift calculationNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3peak pickingNMRViewJohnson, One Moon Scientific
4data analysisNMRViewJohnson, One Moon Scientific
5collectionXwinNMRBruker Biospin
6chemical shift assignmentCARAKeller R., Wuthrich K.
7data analysisCARAKeller R., Wuthrich K.
8data analysisSANEDuggan, Legge, Dyson & Wright
9data analysisTALOSCornilescu, Delaglio and Bax
10structure solutionX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
11data analysisX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
12refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore