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Solution Structure of the Ubiquitin-Binding Motif of Human Polymerase Iota
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HCCH-TOCSY 1-4 mM [U-100% 13C; U-100% 15N] D2O-1, 1-4 mM [U-100% 13C; U-100% 15N] H2O-2 100% D2O 0.1 7 ambient 25 2 3D HNCA 1-4 mM [U-100% 13C; U-100% 15N] D2O-1, 1-4 mM [U-100% 13C; U-100% 15N] H2O-2 100% D2O 0.1 7 ambient 25 3 3D HNCACB 1-4 mM [U-100% 13C; U-100% 15N] D2O-1, 1-4 mM [U-100% 13C; U-100% 15N] H2O-2 100% D2O 0.1 7 ambient 25 4 3D HN(CO)CA 1-4 mM [U-100% 13C; U-100% 15N] D2O-1, 1-4 mM [U-100% 13C; U-100% 15N] H2O-2 100% D2O 0.1 7 ambient 25 5 3D HNCO 1-4 mM [U-100% 13C; U-100% 15N] D2O-1, 1-4 mM [U-100% 13C; U-100% 15N] H2O-2 100% D2O 0.1 7 ambient 25 6 3D HN(COCA)CB 1-4 mM [U-100% 13C; U-100% 15N] D2O-1, 1-4 mM [U-100% 13C; U-100% 15N] H2O-2 100% D2O 0.1 7 ambient 25 7 3D 1H-15N NOESY 1-4 mM [U-100% 13C; U-100% 15N] D2O-1, 1-4 mM [U-100% 13C; U-100% 15N] H2O-2 100% D2O 0.1 7 ambient 25 8 3D 1H-13C NOESY 1-4 mM [U-100% 13C; U-100% 15N] D2O-1, 1-4 mM [U-100% 13C; U-100% 15N] H2O-2 100% D2O 0.1 7 ambient 25
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 25 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH 2.19 Schwieters, Kuszewski, Tjandra and Clore 2 refinement X-PLOR NIH 2.19 Schwieters, Kuszewski, Tjandra and Clore