2KGI

Solution structure of JARID1A C-terminal PHD finger in complex with H3(1-9)K4me3


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
11H,15N-HSQC0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
21H,13C-HSQC0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
3HNCACB0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
4HBHACONH0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
5CBCACONH0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
62D 1H-1H NOESY0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
7HCCHTOCSY0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
815N-EDITED 1H,1H-NOESY0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
913C-EDITED 1H,1H-NOESY0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
1015N IPAP HSQC0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O200 mM NACL7.01 atm298.2
1113C,15N-FILTERED, 13C-EDITED 1H,1H-NOESY0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
1213C,15N-FILTERED, 2D 1H,1H-NOESY0.2-0.5 MM [U-100% 13C; U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 20 MM SODIUM PHOSPHATE90% H2O/10% D2O20 mM SODIUM PHOSPHATE7.01 atm293.2
1315N IPAP HSQC0.2-0.5 MM [U-100% 15N] JARID1A PHD FINGER 3, 0.2-0.5 MM H3(1-9)K4ME3, 5 MM DTT, 1 MM ZINC CHLORIDE, 10 MM MOPS, 12 MG/ML BACTERIOPHAGE PF190% H2O/10% D2O200 mM NACL7.01 atm298.2
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX800
NMR Refinement
MethodDetailsSoftware
simulated annealingthe structure was first calculated using CYANA and then refined using XPLOR-NIHX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR NIH2.18Schwieters, C. et al.
2structure solutionCYANA2.1Guntert, P. et al.