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SOLUTION STRUCTURE OF 30S RIBOSOMAL PROTEIN S8E; FROM Methanothermobacter thermautotrophicus, NORTHEASTSTRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET Tr71d
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 2 2D 1H-15N HSQC 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 3 2D 1H-15N HSQC 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 4 2D 1H-15N HSQC 1 mM [U-10% 13C; U-100% 15N] rps8e-2 95% H2O/5% D2O n.a. 6.5 ambient 298 5 3D 1H-15N NOESY 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 6 3D 1H-13C NOESY 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 7 3D 1H-13C NOESY 0.94 mM [U-100% 13C; U-100% 15N] rps8e-3 100% D2O n.a. 6.5 ambient 298 8 3D CBCA(CO)NH 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 9 3D HNCACB 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 10 3D HBHA(CO)NH 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 11 3D HCCH-TOCSY 0.94 mM [U-100% 13C; U-100% 15N] rps8e-1 95% H2O/5% D2O n.a. 6.5 ambient 298 12 2D 1H-13C HSQC 0.94 mM [U-100% 13C; U-100% 15N] rps8e-3 100% D2O n.a. 6.5 ambient 298 13 2D 1H-13C HSQC 1 mM [U-10% 13C; U-100% 15N] rps8e-2 95% H2O/5% D2O n.a. 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 800 3 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 refinement CYANA Guntert, Mumenthaler and Wuthrich 4 structure solution CYANA Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA Guntert, Mumenthaler and Wuthrich 6 peak picking AutoStructure Huang, Tejero, Powers and Montelione 7 refinement AutoStructure Huang, Tejero, Powers and Montelione 8 geometry optimization AutoStructure Huang, Tejero, Powers and Montelione 9 geometry optimization PSVS Bhattacharya and Montelione 10 chemical shift assignment AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 11 chemical shift assignment XEASY Bartels et al. 12 data analysis XEASY Bartels et al. 13 peak picking XEASY Bartels et al. 14 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 15 collection TopSpin Bruker Biospin 16 collection VnmrJ Varian