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Solution NMR structure of tetratricopeptide repeat domain protein SrU_0103 from Salinibacter ruber, Northeast Structural Genomics Consortium (NESG) Target SrR115C
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 2 2D 1H-15N HSQC 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 3 3D HNCO 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 4 3D 1H-15N NOESY 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 5 3D 1H-13C NOESY 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 6 4,3D GFT CABCACONHN 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 7 4,3D GFT HNNCABCA 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 8 4,3D GFT HABCABCONHN 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 9 3D HCCH-COSY 1.37 mM [U-100% 13C; U-100% 15N] SRU_0103-1 95% H2O/5% D2O 6.5 ambient 298 10 2D 1H-13C HSQC 1.05 mM [U-10% 13C; U-100% 15N] SRU_0103-2 95% H2O/5% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, torsion angle dynamics, molecular dynamics, simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 refinement CYANA Guntert, Mumenthaler and Wuthrich 4 structure solution CYANA Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA Guntert, Mumenthaler and Wuthrich 6 refinement AutoStructure Huang, Tejero, Powers and Montelione 7 data analysis AutoStructure Huang, Tejero, Powers and Montelione 8 structure solution AutoStructure Huang, Tejero, Powers and Montelione 9 data analysis PSVS Bhattacharya and Montelione 10 refinement PSVS Bhattacharya and Montelione 11 data processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 12 data analysis AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 13 chemical shift assignment AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 14 data analysis XEASY Bartels et al. 15 chemical shift assignment XEASY Bartels et al. 16 refinement XEASY Bartels et al. 17 data collection TopSpin Bruker Biospin 18 data collection VnmrJ Varian