2KBF
solution structure of carboxyl-terminal domain of Dbp5p
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.7 mM [U-13C; U-15N] protein, 20 mM MES, 100 mM potassium acetate | 90% H2O/10% D2O | 0.1 | 6.7 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.7 mM [U-13C; U-15N] protein, 20 mM MES, 100 mM potassium acetate | 90% H2O/10% D2O | 0.1 | 6.7 | ambient | 298 | |
3 | 3D HCCH-TOCSY | 0.7 mM [U-13C; U-15N] protein, 20 mM MES, 100 mM potassium acetate | 90% H2O/10% D2O | 0.1 | 6.7 | ambient | 298 | |
4 | 3D HNCA | 0.7 mM [U-13C; U-15N] protein, 20 mM MES, 100 mM potassium acetate | 90% H2O/10% D2O | 0.1 | 6.7 | ambient | 298 | |
5 | 4D 15N, 13C-edited NOESY | 0.7 mM [U-13C; U-15N] protein, 20 mM MES, 100 mM potassium acetate | 90% H2O/10% D2O | 0.1 | 6.7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR NIH | 2.21 | Schwieters, Kuszewski, Tjandra, Clore |
2 | data analysis | NMRPipe | 2.3 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax |
3 | refinement | X-PLOR NIH | 2.21 | Schwieters, Kuszewski, Tjandra, Clore |