Experiment: 2KB1

NMR studies of a channel protein without membrane: structure and dynamics of water-solubilized KcsA

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293
2	3D CBCA(CO)NH	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293
3	3D HNCO	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293
4	3D HNCA	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293
5	3D HNCACB	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293
6	3D HCCH-TOCSY	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293
7	T1, T2, hetNOE	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293
8	R2 dispersion	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293
9	diffusion measurement	0.2 mM [U-15N] WSK3_15N, 55 M [U-2H] D2O, 0.2 mM DSS	95% H2O/5% D2O	no salt	4.5	ambient	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	Bruker	AVANCE	700
3	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
simulated annealing		CYANA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
2	structure solution	X-PLOR NIH	2.15.0	Schwieters, Kuszewski, Tjandra and Clore
3	collection	TopSpin	1.3	Bruker Biospin
4	chemical shift assignment	Sparky	3.110	Goddard
5	peak picking	Sparky	3.110	Goddard
6	data analysis	Sparky	3.110	Goddard
7	processing	NMRPipe	2.4	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8	data analysis	NMRPipe	2.4	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
9	peak picking	NMRPipe	2.4	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
10	refinement	X-PLOR NIH	2.15.0	Schwieters, Kuszewski, Tjandra and Clore