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data-driven model of MED1:DNA complex
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 2 3D CBCA(CO)NH 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 3 3D HNCO 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 4 3D HNCA 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 5 3D HNCACB 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 6 3D HBHA(CO)NH 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 7 3D HCCH-TOCSY 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 8 3D HNHA 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 9 3D 1H-15N NOESY 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 10 2D 1H-1H NOESY 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT 90% H2O/10% D2O 6.5 298 11 2D 1H-15N HSQC 40 mM sodium chloride, 20 mM potassium phosphate, 1 mM DTT, 6 mg/mL Pf1 phage 90% H2O/10% D2O 6.5 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Bruker DRX 800
NMR Refinement Method Details Software simulated annealing HADDOCK CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger A. T. et.al.