☰ Navigation Tabs
Solution structure of RRM2 domain of PABP1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 2 2D 1H-13C HSQC 1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 3 3D CBCA(CO)NH 1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 4 3D HNCACB 1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 5 3D HNCO 1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 6 3D HCCH-TOCSY 1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 7 3D 1H-13C NOESY 1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 8 3D 1H-15N NOESY 1 mM [U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 9 3D 1H-15N TOCSY 1 mM [U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 90% H2O/10% D2O 0.04 6.1 ambient 303 10 2D 1H-1H NOESY 1 mM PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT 100% D2O 0.04 6.1 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing, molecular dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 25 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 2.1 Bruker Biospin 2 processing TopSpin 2.1 Bruker Biospin 3 structure solution CYANA 2.0 Guntert, Mumenthaler and Wuthrich 4 structure solution ARIA 1.3 Linge, O'Donoghue and Nilges 5 refinement ARIA 1.3 Linge, O'Donoghue and Nilges 6 data analysis CCPN_Analysis 1 Vranken, Boucher, Stevens, Fogh, Laue 7 chemical shift assignment CCPN_Analysis 1 Vranken, Boucher, Stevens, Fogh, Laue 8 refinement CNS 1.1 Brunger, Adams, Clore, Gros, Nilges and Read 9 data analysis TALOS Cornilescu, Delaglio and Bax