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Solution NMR structure of protein encoded by gene BPP1335 from Bordetella parapertussis: Northeast Structural Genomics Target BpR195
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 2 3D CBCA(CO)NH 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 3 3D HNCACB 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 4 3D HBHA(CO)NH 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 5 4,3D GFT HCCH COSY 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 6 3D 15N-13C simultanious NOESY 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 7 3D HNCO 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 8 3D HCCH-TOCSY 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 9 2D 1H-13C HSQC 1.069 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O 100 5.5 ambient 298 10 2D 1H-13C HSQC 1.1 mM U-100%N, 5%C entity 95% H2O/5% D2O 100 5.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750
NMR Refinement Method Details Software simulated annealing AutoAssign
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 2 structure solution AutoStructure Huang, Tejero, Powers and Montelione 3 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 structure solution CYANA Guntert, Mumenthaler and Wuthrich 5 structure solution MOLMOL Koradi, Billeter and Wuthrich 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 7 geometry optimization PSVS Bhattacharya and Montelione 8 data analysis TALOS Cornilescu, Delaglio and Bax 9 collection VnmrJ Varian 10 data analysis XEASY Bartels et al.