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Solution Structure of a Tetrahaem Cytochrome from Shewanella Frigidimarina
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 3 mM Sfc 92% H2O/8% D2O 0.1 6.1 ambient atm 303 2 2D 1H-1H TOCSY 3 mM Sfc 92% H2O/8% D2O 0.1 6.1 ambient atm 303 3 2D DQF-COSY 3 mM Sfc 92% H2O/8% D2O 0.1 6.1 ambient atm 303 4 2D 1H-1H NOESY 3 mM Sfc 100% D2O 0.1 6.1 ambient atm 303 5 2D 1H-1H TOCSY 3 mM Sfc 100% D2O 0.1 6.1 ambient atm 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 500
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing XWIN-NMR
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 600 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis XWIN-NMR Bruker Biospin 2 peak picking XEASY Bartels et al. 3 integration Sparky Goddard 4 peak picking Sparky Goddard 5 structure solution PARADYANA (INDYANA) Turner et al. 6 superimposition MOLMOL 2.0 Koradi, Billeter and Wuthrich 7 visual inspection MOLMOL 2.0 Koradi, Billeter and Wuthrich 8 rms and mean structure calculations MOLMOL 2.0 Koradi, Billeter and Wuthrich 9 stereochemical analysis WHAT IF 20030529-0952 Vriend 10 identification and classification of the consensus secondary structure ProcheckNMR Laskowski and MacArthur 11 refinement PARADYANA (INDYANA) Turner et al.