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NMR Structure of Helicobacter pylori JHP0511 (HP0564).
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-15N] JHP0511, 50 mM potassium phosphate 90% H2O/10% D2O 50 5 ambient 298 2 2D 1H-13C HSQC 1 mM [U-13C; U-15N] JHP0511, 50 mM potassium phosphate 90% H2O/10% D2O 50 5 ambient 298 3 2D 1H-1H NOESY 1 mM JHP0511, 50 mM potassium phosphate 90% H2O/10% D2O 50 5 ambient 298 4 3D CBCA(CO)NH 1 mM [U-13C; U-15N] JHP0511, 50 mM potassium phosphate 90% H2O/10% D2O 50 5 ambient 298 5 3D C(CO)NH 1 mM [U-13C; U-15N] JHP0511, 50 mM potassium phosphate 90% H2O/10% D2O 50 5 ambient 298 6 3D H(CCO)NH 1 mM [U-13C; U-15N] JHP0511, 50 mM potassium phosphate 90% H2O/10% D2O 50 5 ambient 298 7 3D HCCH-TOCSY 1 mM [U-13C; U-15N] JHP0511, 50 mM potassium phosphate 90% H2O/10% D2O 50 5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics, energy minimization CYANA calculations, 25000 steps, 10000 steps of conjugate gradient energy minimization using AMBER XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with favorable non-bond energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing XwinNMR Bruker Biospin 2 peak picking Sparky Goddard 3 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 4 geometry optimization Amber 9 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 5 data analysis ProcheckNMR Laskowski and MacArthur 6 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich