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The actinorhodin apo acyl carrier protein from S. coelicolor
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D 1H-15N HSQC
1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide
95% H2O/5% D2O
5.5
ambient
298
2
3D CBCA(CO)NH
1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide
95% H2O/5% D2O
5.5
ambient
298
3
3D HNCO
1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide
95% H2O/5% D2O
5.5
ambient
298
4
3D HNCACB
1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide
95% H2O/5% D2O
5.5
ambient
298
5
3D HCCH-TOCSY
1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide
95% H2O/5% D2O
5.5
ambient
298
6
3D HNHA
1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide
95% H2O/5% D2O
5.5
ambient
298
7
3D 1H-15N NOESY
1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide
95% H2O/5% D2O
5.5
ambient
298
8
3D 1H-13C NOESY
1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide
95% H2O/5% D2O
5.5
ambient
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Varian
INOVA
600
NMR Refinement
Method
Details
Software
simulated annealing
All structure calculations were carried out using the Ambiguous Restraints for Iterative Assignment of NOEs (ARIA) protocol Version 1.2, which includes an algorithm that attempts to correct for the effects of spin diffusion, was use. Torsion Angle Likelihood Obtained from Shift and sequence similarity (TALOS) and was used to predict φ and ψ dihedral angle restraints. Initially, structure calculation runs contained 8 iterations of 20 structures each, with the best 7 structures in each iteration (sorted according to total energy) being used for analysis and assignment. The number of dynamics steps was increased over default values to 20000 and 16000 for the first and second cooling stages respectively. After each run, violated restraints were checked, and those arising from noise peaks or incorrect assignments were removed/reassigned. Final ensembles of 100 structures were calculated from calibrated restraint tables. The 20 best structures (sorted according to total energy) were selected for water refinement. Water refined structures were calculated using the slightly modified refinement script applied to the RECOORD database. PROCHECK and WHATCHECK and quality indicators were compared to the average values for the RECOORD database of protein NMR structures.
ARIA
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
20
Conformers Submitted Total Number
20
Representative Model
1 (closest to the average)
Additional NMR Experimental Information
Details
The structure was determined using a combination of NOE data (ambiguous and unambiguous as determined by ARIA) combined with J-coupling and TALOS dihedral restraints