2K0D
NMR structure of a mutant colicin e7 immunity protein im7 with an extended helix III
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCACB | 1 mM [U-99% 13C; U-99% 15N] potassium phosphate | 90% H2O/10% D2O | 50 | ambient atm | 298 | ||
2 | 3D CBCA(CO)NH | 1 mM [U-99% 13C; U-99% 15N] potassium phosphate | 90% H2O/10% D2O | 50 | ambient atm | 298 | ||
3 | 3D HNCO | 1 mM [U-99% 13C; U-99% 15N] potassium phosphate | 90% H2O/10% D2O | 50 | ambient atm | 298 | ||
4 | 3D 1H-15N NOESY | 1 mM [U-99% 15N] potassium phosphate | 90% H2O/10% D2O | 50 | ambient atm | 298 | ||
5 | 3D 1H-15N TOCSY | 1 mM [U-99% 15N] potassium phosphate | 90% H2O/10% D2O | 50 | ambient atm | 298 | ||
6 | 3D 1H-13C NOESY | 1 mM [U-99% 13C; U-99% 15N] potassium phosphate | 100% D2O | 50 | ambient atm | 298 | ||
7 | 3D HCCH-TOCSY | 1 mM [U-99% 13C; U-99% 15N] potassium phosphate | 90% H2O/10% D2O | 50 | ambient atm | 298 | ||
8 | 3D H(CCO)NH | 1 mM [U-99% 13C; U-99% 15N] potassium phosphate | 90% H2O/10% D2O | 50 | ambient atm | 298 | ||
9 | 3D C(CO)NH | 1 mM [U-99% 13C; U-99% 15N] potassium phosphate | 90% H2O/10% D2O | 50 | ambient atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 900 |
2 | Varian | INOVA | 600 |
3 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, simulated annealing | NMRView |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRView | 5.1.1 | Johnson, One Moon Scientific |
2 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | refinement | ProcheckNMR | Laskowski and MacArthur | |
7 | refinement | WHAT IF | Vriend | |
8 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
9 | peak picking | AtnosCandid | 1.1 | Herrmann, Guntert and Wuthrich |
10 | chemical shift assignment | AtnosCandid | 1.1 | Herrmann, Guntert and Wuthrich |