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NMR solution structure of protein VPA0419 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR68
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419 90% H2O/10% D2O 100 5.5 ambient 298 2 2D 1H-13C HSQC 1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419 90% H2O/10% D2O 100 5.5 ambient 298 3 4,3 D GFT HNNACBCA 1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419 90% H2O/10% D2O 100 5.5 ambient 298 4 4,3 D GFT CABCACONHN 1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419 90% H2O/10% D2O 100 5.5 ambient 298 5 4,3D HABCABCONHN 1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419 90% H2O/10% D2O 100 5.5 ambient 298 6 4,3D GFT HCCH COSY 1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419 90% H2O/10% D2O 100 5.5 ambient 298 7 3D HCCH-COSY 1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419 90% H2O/10% D2O 100 5.5 ambient 298 8 3D SimNOESY 1.07 mM [U-100% 13C; U-100% 15N] protein VPA0419 90% H2O/10% D2O 100 5.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing AutoAssign
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 2 chemical shift assignment AutoStructure Huang, Tejero, Powers and Montelione 3 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CYANA Guntert, Mumenthaler and Wuthrich 5 data processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 validation PSVS Bhattacharya and Montelione 7 data analysis TALOS Cornilescu, Delaglio and Bax 8 data collection VnmrJ Varian