2JY5
NMR structure of Ubiquilin 1 UBA domain
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM sodium phosphate, 0.05 % sodium azide | 93% H2O/7% D2O | 20 mM | 6.8 | ambient | 296 | |
2 | 2D 1H-1H TOCSY | 20 mM sodium phosphate, 0.05 % sodium azide | 93% H2O/7% D2O | 20 mM | 6.8 | ambient | 296 | |
3 | 2D 1H-1H NOESY | 20 mM sodium phosphate, 0.05 % sodium azide | 93% H2O/7% D2O | 20 mM | 6.8 | ambient | 296 | |
4 | 3D 15N-SEPARATED TOCSY | 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 6.8 | ambient | 296 | |
5 | 2D 1H-15N IPAP HSQC | 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 6.8 | ambient | 296 | |
6 | HMQC-J | 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 6.8 | ambient | 296 | |
7 | 15N R1 AND R2 | 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 6.8 | ambient | 296 | |
8 | 15N{1H} NOE | 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 6.8 | ambient | 296 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | Linge, O'Donoghue and Nilges | |
2 | geometry optimization | ARIA | Linge, O'Donoghue and Nilges | |
3 | refinement | ARIA | Linge, O'Donoghue and Nilges |