2JTO
Solution Structure of Tick Carboxypeptidase Inhibitor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.76 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
2 | 2D 1H-1H TOCSY | 0.76 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
3 | 2D 1H-1H COSY | 0.76 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
4 | 2D 1H-15N HSQC | 0.7 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
5 | 3D 1H-15N NOESY | 0.7 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
6 | 3D 1H-15N TOCSY | 0.7 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
7 | 2D 1H-1H NOESY | 0.7 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
8 | 2D 1H-1H TOCSY | 0.7 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
9 | 2D 1H-15N HSQC | 0.7 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
10 | 3D HNHA | 0.7 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
11 | 3D HNHB | 0.7 mM [U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
12 | 2D 1H-15N HSQC | 0.1 mM [U-100% 13C; U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
13 | 2D 1H-13C HSQC | 0.1 mM [U-100% 13C; U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
14 | 3D HNCO | 0.1 mM [U-100% 13C; U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
15 | 3D CBCA(CO)NH | 0.1 mM [U-100% 13C; U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
16 | 3D HNCACB | 0.1 mM [U-100% 13C; U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 | |
17 | 3D C(CO)NH | 0.1 mM [U-100% 13C; U-100% 15N] TCI | 95% H2O/5% D2O | 78.4 | 5.6 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | stucture calculation with torsion angel dynamics, the 20 conformers with the lowest final CYANA target were subjected to restrained energy minimization energy in vacuo with the program AMBER7 | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker Biospin |
2 | processing | XwinNMR | 3.5 | Bruker Biospin |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | chemical shift calculation | MARS | Jung adn Markus Zweckstetter | |
6 | chemical shift calculation | GARANT | Bartels, Guntert, Billeter and Wuthrich | |
7 | data analysis | NMRView | Johnson, One Moon Scientific | |
8 | peak picking | NMRView | Johnson, One Moon Scientific | |
9 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
10 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
11 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
12 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll | |
13 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
14 | data analysis | VADAR | DS Wishart | |
15 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich |