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Solution structure of matrix metalloproteinase 3 (MMP-3) in the presence of 3-4'-cyanobyphenyl-4-yloxy)-n-hdydroxypropionamide (MMP-3 inhibitor VII)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-98% 15N] entity_1 90% H2O/10% D2O 300 8 ambient 298 2 3D 1H-15N NOESY 1 mM [U-98% 15N] entity_1 90% H2O/10% D2O 300 8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900
NMR Refinement Method Details Software molecular dynamics The docked structure with Autodock was energy minimized with Xplor-NIH using the experimental data X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 1 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 refinement AutoDock 3.0 Morris, Goodsell, Huey, Lindstorm, Hart, Kurowski, Halliday, Belew, Olson 3 data analysis Sparky Goddard