2JR1

Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCACB0.5 mM [U-99% 13C; U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
23D CBCA(CO)NH0.5 mM [U-99% 13C; U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
33D HCCH-TOCSY0.5 mM [U-99% 13C; U-99% 15N] HNS79c100% D2O0.256.8ambient293
43D CCH-TOCSY0.5 mM [U-99% 13C; U-99% 15N] HNS79c100% D2O0.256.8ambient293
53D 1H-15N TOCSY0.5 mM [U-99% 13C; U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
63D 1H-15N NOESY0.5 mM [U-99% 13C; U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
73D 1H-15N NOESY0.5 mM [U-99% 13C; U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
83D 1H-13C NOESY0.5 mM [U-99% 13C; U-99% 15N] HNS79c100% D2O0.256.8ambient293
9Heteronuclear NOE0.5 mM [U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
10Heteronuclear NOE0.5 mM [U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
11T1 Relaxation0.5 mM [U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
12T1 Relaxation0.5 mM [U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
13T2 Relaxation0.5 mM [U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
14T2 Relaxation0.5 mM [U-99% 15N] HNS79c95% H2O/5% D2O0.256.8ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, minimizationafter the torsion angle dynamics with Dyana software, structures were minimized until 1 kcal/A in the discover module of the Insight package using conjugate gradients.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with acceptable covalent geometry
Conformers Calculated Total Number40
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsH/D exchange Nhsqc experiments were performed using smaple_2, sample_condiction_2, and spectrometer_2
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe5.0Delaglio, F. et al.
2data analysisNMRView5.0Johnson, B.A. et al.
3structure solutionDYANAGuntert, P. et al.
4refinementDiscoverAccelrys