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Structure of the Leucine-Rich Repeat domain of LANP
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 0.5 mM [U-98% 15N] LANP LRR domain, 10 mM TRIS, 2 mM TCEP, 90 % H2O, 10 % [U-99% 2H] D2O, 0.02 % sodium azide 90% H2O/10% D2O 7.0 ambient 300 2 3D 1H-13C NOESY 0.5 mM [U-98% 13C; U-98% 15N] LANP LRR domain, 10 mM TRIS, 2 mM TCEP, 90 % H2O, 10 % [U-99% 2H] D2O, 0.02 % sodium azide 90% H2O/10% D2O 7.0 ambient 300 3 2D J-modulated 1H-15N HSQC 0.5 mM [U-98% 15N] LANP LRR domain, 10 mM TRIS, 2 mM TCEP, 90 % H2O, 10 % [U-99% 2H] D2O, 0.02 % sodium azide 90% H2O/10% D2O 7.0 ambient 300 4 2D J-modulated 1H-15N HSQC 0.5 mM [U-98% 15N] LANP LRR domain, 10 mM TRIS, 2 mM TCEP, 90 % H2O, 10 % [U-99% 2H] D2O, 0.02 % sodium azide 90% H2O/10% D2O 7.0 ambient 300
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Bruker AVANCE 600 3 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing water refinement NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (regularity of secondary sturctures)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis XEASY Bartels et al. 5 chemical shift assignment XEASY Bartels et al. 6 peak picking XEASY Bartels et al. 7 structure solution ARIA 1.2 Linge, O'Donoghue and Nilges 8 refinement ARIA 1.2 Linge, O'Donoghue and Nilges