2JPR | pdb_00002jpr

Joint refinement of the HIV-1 CA-NTD in complex with the assembly inhibitor CAP-1

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	100-700 uM [U-15N] sodium phosphate	100% D2O	25	7.0	ambient	308

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AMX	800
2	Bruker	AMX	600

NMR Refinement
Method	Details	Software
molecular dynamics	The structure of the "bound" conformation of the HIV-1 capsid protein (in the presence of the ligand) was obtained from the crystal. The complex was calculated using NMR distance restraints in reference to the bound conformation of the capsid protein. Refinement was performed using simulated molecular dynamics in AMBER 9.0.	Amber

NMR Ensemble Information
Conformer Selection Criteria	all calculated structures submitted
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	Amber	9.0	Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll
2	chemical shift assignment	NMRView		Johnson, One Moon Scientific
3	peak picking	NMRView		Johnson, One Moon Scientific
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax