2JOB
Solution structure of an antilipopolysaccharide factor from shrimp and its possible Lipid A binding site
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D DQF-COSY | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
2 | 2D 1H-1H TOCSY | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
3 | 2D 1H-1H NOESY | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
4 | 2D 1H-15N HSQC | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
5 | 3D 1H-15N NOESY | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 60 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | Bruker Biospin | |
2 | processing | Gifa | Delsuc | |
3 | structure solution | X-PLOR | Brunger | |
4 | refinement | X-PLOR | Brunger |