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NMR structure of the mouse thiamine triphosphatase
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 1H,15N-HSQC 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 2 1H,13C-HSQC 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 3 HNCACB 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 4 1H,13C-HSQC 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 5 CBCACONH 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 6 CCONH 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 7 HCCHTOCSY 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 8 HBACONH 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 9 13C-EDITED 1H,1H-NOESY 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 10 15N-EDITED 1H,1H-NOESY 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298 11 13C-EDITED AROMATIC 1H,1H-NOESY 1.0 mM [U-100% 13C; U-100% 15N] ThTPase_MOUSE, 10 mM MOPS, 100 mM NaCl 90% H2O/10% D2O 100 7.0 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Bruker DMX 750 3 Varian INOVA 900
NMR Refinement Method Details Software torsion angle dynamics,simulated annealing,distance geometry STRUCTURES ARE BASED ON A TOTAL OF
4699 NOE RESTRAINTS (1639 INTRA, 921 SEQUENTIAL, 757 MEDIUM AND
1382 LONG RANGE), 176 HBOND RESTRAINTS, AND 289 PHI AND PSI
DIHEDRAL ANGLE CONSTRAINTS Xplor-NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Xplor-NIH 2.9.3 Schwieters, Kuszewski, Tjandra and Clore 2 collection XwinNMR 3.5 Bruker 3 processing NMRPipe 97.027.12.56 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis Sparky 3.113 Goddard and Kneller 5 data analysis GARANT 2.1 Bartels, Guntert, Billeter and Wuthrich 6 structural calculation CYANA 2.1 Guntert, Mumenthaler and Wuthrich