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Galactose oxidase. MatGO. Copper free, expressed in Pichia Pastoris.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GOG PDB ENTRY 1GOG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.9 18% PEF 8000, 100MM MES PH5.9, 200MM CALCIUM ACETATE
Crystal Properties Matthews coefficient Solvent content 1.96 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.95 α = 90 b = 88.52 β = 117.24 c = 85.35 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 38.3 96.6 0.04 12.8 2.7 53734
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.9 85.5 0.15 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GOG 1.84 38.24 48323 5409 97.1 0.167 0.163 0.163 0.201 0.2003 RANDOM 18.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.23 -0.03 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.793 r_dihedral_angle_4_deg 15.811 r_dihedral_angle_3_deg 12.17 r_dihedral_angle_1_deg 6.734 r_scangle_it 2.345 r_scbond_it 1.626 r_angle_refined_deg 1.265 r_mcangle_it 1.08 r_mcbond_it 0.682 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.793 r_dihedral_angle_4_deg 15.811 r_dihedral_angle_3_deg 12.17 r_dihedral_angle_1_deg 6.734 r_scangle_it 2.345 r_scbond_it 1.626 r_angle_refined_deg 1.265 r_mcangle_it 1.08 r_mcbond_it 0.682 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.193 r_nbd_refined 0.192 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.119 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4818 Nucleic Acid Atoms Solvent Atoms 599 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing