2JKM

Focal Adhesion Kinase catalytic domain in complex with bis-anilino pyrimidine inhibitor


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MP8PDB ENTRY 1MP8

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.525% PEG4000, 0.1 M TRIS PH8.5, 10 MM TCEP
Crystal Properties
Matthews coefficientSolvent content
2.0840.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.058α = 90
b = 45.602β = 95.39
c = 66.44γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2006-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29ANSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.35092.60.0110.83.410867
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3770.10.243.362.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MP82.3137.561033651892.50.210550.207590.27227RANDOM36.907
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.11-0.19-0.01-0.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.714
r_dihedral_angle_4_deg22.097
r_dihedral_angle_3_deg17.859
r_dihedral_angle_1_deg8.68
r_scangle_it2.139
r_angle_refined_deg1.475
r_scbond_it1.339
r_mcangle_it0.877
r_mcbond_it0.546
r_symmetry_hbond_refined0.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.714
r_dihedral_angle_4_deg22.097
r_dihedral_angle_3_deg17.859
r_dihedral_angle_1_deg8.68
r_scangle_it2.139
r_angle_refined_deg1.475
r_scbond_it1.339
r_mcangle_it0.877
r_mcbond_it0.546
r_symmetry_hbond_refined0.41
r_nbtor_refined0.306
r_symmetry_vdw_refined0.257
r_nbd_refined0.211
r_xyhbond_nbd_refined0.17
r_chiral_restr0.12
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2089
Nucleic Acid Atoms
Solvent Atoms72
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing