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Focal Adhesion Kinase catalytic domain in complex with bis-anilino pyrimidine inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MP8 PDB ENTRY 1MP8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 25% PEG4000, 0.1 M TRIS PH8.5, 10 MM TCEP
Crystal Properties Matthews coefficient Solvent content 2.08 40.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.058 α = 90 b = 45.602 β = 95.39 c = 66.44 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 92.6 0.01 10.8 3.4 10867
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.37 70.1 0.24 3.36 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MP8 2.31 37.56 10336 518 92.5 0.21055 0.20759 0.2018 0.27227 0.2636 RANDOM 36.907
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.19 -0.01 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.714 r_dihedral_angle_4_deg 22.097 r_dihedral_angle_3_deg 17.859 r_dihedral_angle_1_deg 8.68 r_scangle_it 2.139 r_angle_refined_deg 1.475 r_scbond_it 1.339 r_mcangle_it 0.877 r_mcbond_it 0.546 r_symmetry_hbond_refined 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.714 r_dihedral_angle_4_deg 22.097 r_dihedral_angle_3_deg 17.859 r_dihedral_angle_1_deg 8.68 r_scangle_it 2.139 r_angle_refined_deg 1.475 r_scbond_it 1.339 r_mcangle_it 0.877 r_mcbond_it 0.546 r_symmetry_hbond_refined 0.41 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.257 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.12 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2089 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing