2JKK

Focal Adhesion Kinase catalytic domain in complex with bis-anilino pyrimidine inhibitor


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MP8PDB ENTRY 1MP8

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.537%PEG4K, 0.2M LISO4, 0.1M TRIS PH8.5, 10 MM TCEP
Crystal Properties
Matthews coefficientSolvent content
2.141.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.135α = 90
b = 45.153β = 94.7
c = 67.457γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2006-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29ANSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125093.20.1111.23.916953
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.07610.312.582.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MP8231.511607087493.590.181890.178960.23628RANDOM28.216
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.09-0.05-0.230.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.144
r_dihedral_angle_4_deg18.154
r_dihedral_angle_3_deg15.311
r_dihedral_angle_1_deg5.693
r_scangle_it3.752
r_scbond_it2.406
r_angle_refined_deg1.4
r_mcangle_it1.4
r_mcbond_it1.007
r_symmetry_hbond_refined0.401
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.144
r_dihedral_angle_4_deg18.154
r_dihedral_angle_3_deg15.311
r_dihedral_angle_1_deg5.693
r_scangle_it3.752
r_scbond_it2.406
r_angle_refined_deg1.4
r_mcangle_it1.4
r_mcbond_it1.007
r_symmetry_hbond_refined0.401
r_nbtor_refined0.308
r_symmetry_vdw_refined0.253
r_xyhbond_nbd_refined0.213
r_nbd_refined0.211
r_chiral_restr0.09
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2075
Nucleic Acid Atoms
Solvent Atoms139
Heterogen Atoms38

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing