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The structure of splA-ryanodine receptor domain and SOCS box containing 1 in complex with a PAR-4 peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FNJ A HOMOLOGY MODEL FROM PDB ENTRY 2FNJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 25% PEG3350, 0.2M NACL, 0.1M BIS-TRIS PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.46 49.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.523 α = 90 b = 82.957 β = 104.42 c = 38.54 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS 2008-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 37.32 96.2 0.07 12.64 3.48 20678
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.81 91.4 0.54 1.67 3.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT A HOMOLOGY MODEL FROM PDB ENTRY 2FNJ 1.79 83.05 19615 1063 95.9 0.194 0.192 0.1992 0.24 0.224 RANDOM 13.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 1.16 -0.85 1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.474 r_dihedral_angle_4_deg 15.35 r_dihedral_angle_3_deg 13.013 r_scangle_it 8.503 r_dihedral_angle_1_deg 6.394 r_scbond_it 6.334 r_mcangle_it 4.091 r_mcbond_it 3.048 r_angle_refined_deg 1.321 r_angle_other_deg 0.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.474 r_dihedral_angle_4_deg 15.35 r_dihedral_angle_3_deg 13.013 r_scangle_it 8.503 r_dihedral_angle_1_deg 6.394 r_scbond_it 6.334 r_mcangle_it 4.091 r_mcbond_it 3.048 r_angle_refined_deg 1.321 r_angle_other_deg 0.871 r_chiral_restr 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1659 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing