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Crystal structure of the wild-type HupR receiver domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 2.4 M NACL, 0.2 M MGCL2, 0.1 M TRIS-HCL PH 8.0, 28% ETHYLENE GLYCOL, AND 0.1% MONO-THIO-GLYCEROL
Crystal Properties Matthews coefficient Solvent content 3.53 65.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.931 α = 90 b = 89.931 β = 90 c = 53.874 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40.22 100 0.05 23.5 6.9 12722 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 100 0.38 5.1 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.1 40.23 12722 671 99.99 0.22473 0.22379 0.2207 0.24347 0.24 RANDOM 46.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.04 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.525 r_dihedral_angle_4_deg 18.281 r_dihedral_angle_3_deg 15.919 r_dihedral_angle_1_deg 6.122 r_scangle_it 3.167 r_scbond_it 2.194 r_angle_refined_deg 1.441 r_mcangle_it 1.391 r_mcbond_it 0.943 r_symmetry_vdw_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.525 r_dihedral_angle_4_deg 18.281 r_dihedral_angle_3_deg 15.919 r_dihedral_angle_1_deg 6.122 r_scangle_it 3.167 r_scbond_it 2.194 r_angle_refined_deg 1.441 r_mcangle_it 1.391 r_mcbond_it 0.943 r_symmetry_vdw_refined 0.294 r_nbtor_refined 0.289 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.191 r_chiral_restr 0.102 r_symmetry_hbond_refined 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1091 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing