X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2UV3PDB ENTRY 2UV3 CHAIN A

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5300 NL 11.5 MG/ML SIRP GAMMA PLUS 50 NL RESERVOIR (2.0 M AMMONIUM SULPHATE, 0.1 M BIS-TRIS PH 6.5) EQUILIBRATED AGAINST 95 UL OF RESERVOIR AT 20.5 C.
Crystal Properties
Matthews coefficientSolvent content
2.3247.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.39α = 90
b = 76.39β = 90
c = 78.24γ = 120
Symmetry
Space GroupP 64 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2007-06-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM14ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.738.295.20.0543.932.314652-329.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.899.80.73733.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2UV3 CHAIN A1.738.211392772495.20.230.2280.267RANDOM30.98
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.170.080.17-0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.864
r_dihedral_angle_4_deg18.296
r_dihedral_angle_3_deg14.308
r_dihedral_angle_1_deg5.469
r_scangle_it4.686
r_scbond_it3.904
r_mcangle_it2.836
r_mcbond_it2.226
r_angle_refined_deg1.362
r_angle_other_deg0.834
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.864
r_dihedral_angle_4_deg18.296
r_dihedral_angle_3_deg14.308
r_dihedral_angle_1_deg5.469
r_scangle_it4.686
r_scbond_it3.904
r_mcangle_it2.836
r_mcbond_it2.226
r_angle_refined_deg1.362
r_angle_other_deg0.834
r_symmetry_hbond_refined0.233
r_nbd_other0.2
r_nbd_refined0.198
r_symmetry_vdw_other0.197
r_nbtor_refined0.176
r_xyhbond_nbd_refined0.135
r_symmetry_vdw_refined0.09
r_nbtor_other0.084
r_chiral_restr0.071
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.003
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms851
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing