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Structure of avian reovirus sigmaC117-326, P321 crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VRS CHAIN C OF PDB ENTRY 2VRS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.4 0.6-0.75 M AMMONIUM SULPHATE, 0.1 M TRIS-HCL PH 8.4, 25% GLYCEROL, 50 MM ZINC SULPHATE
Crystal Properties Matthews coefficient Solvent content 4.7 73.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.657 α = 90 b = 77.657 β = 90 c = 121.449 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD RD COATED FLAT AND TOROIDAL MIRRORS 2007-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99 0.07 52.6 20 19318 44.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98.7 0.43 10.4 20.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT CHAIN C OF PDB ENTRY 2VRS 2.3 25 17714 1514 99 0.184 0.181 0.1768 0.22 0.2169 RANDOM 38.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.19 1.1 2.19 -3.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.864 r_dihedral_angle_4_deg 18.644 r_dihedral_angle_3_deg 13.095 r_scangle_it 8.862 r_scbond_it 7.171 r_dihedral_angle_1_deg 6.499 r_mcangle_it 4.852 r_mcbond_it 3.225 r_angle_refined_deg 1.509 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.864 r_dihedral_angle_4_deg 18.644 r_dihedral_angle_3_deg 13.095 r_scangle_it 8.862 r_scbond_it 7.171 r_dihedral_angle_1_deg 6.499 r_mcangle_it 4.852 r_mcbond_it 3.225 r_angle_refined_deg 1.509 r_nbtor_refined 0.295 r_symmetry_hbond_refined 0.214 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.183 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1550 Nucleic Acid Atoms Solvent Atoms 202 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing