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Crystal structure of the M. tuberculosis Lysine-epsilon aminotransferase (Rv3290c) complexed to an inhibitor
Crystallization Crystal Properties Matthews coefficient Solvent content 3.07 59.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.037 α = 90 b = 103.037 β = 90 c = 98.215 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20.47 92.2 0.14 10.5 5 22549 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.4 89.09 21385 1157 94 0.163 0.16 0.1603 0.205 0.204 RANDOM 21.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -0.17 -0.33 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.539 r_dihedral_angle_4_deg 20.791 r_dihedral_angle_3_deg 18.094 r_dihedral_angle_1_deg 5.754 r_scangle_it 2.536 r_scbond_it 1.507 r_angle_refined_deg 1.408 r_mcangle_it 0.944 r_mcbond_it 0.541 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.539 r_dihedral_angle_4_deg 20.791 r_dihedral_angle_3_deg 18.094 r_dihedral_angle_1_deg 5.754 r_scangle_it 2.536 r_scbond_it 1.507 r_angle_refined_deg 1.408 r_mcangle_it 0.944 r_mcbond_it 0.541 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.281 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.143 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.099 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3350 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement