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Bacteroides thetaiotaomicron GH84 O-GlcNAcase in complex with 2- Acetylamino-2-deoxy-1-epivalienamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 20% PEG20K,2% DIOXANE,0.1M BICINE PH 9.0
Crystal Properties Matthews coefficient Solvent content 3.08 59.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.398 α = 104.97 b = 94.131 β = 94.09 c = 99.808 γ = 102.48
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 2007-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 97 0.09 8.3 2.5 127497
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 94 0.53 1.6 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 1.95 95.35 117407 6220 97 0.208 0.206 0.2071 0.248 RANDOM 23.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 -0.07 -0.24 0.31 -1.61 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.038 r_dihedral_angle_4_deg 18.671 r_dihedral_angle_3_deg 15.868 r_dihedral_angle_1_deg 6.434 r_scangle_it 3.038 r_scbond_it 2.003 r_angle_refined_deg 1.394 r_mcangle_it 1.308 r_mcbond_it 0.79 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.038 r_dihedral_angle_4_deg 18.671 r_dihedral_angle_3_deg 15.868 r_dihedral_angle_1_deg 6.434 r_scangle_it 3.038 r_scbond_it 2.003 r_angle_refined_deg 1.394 r_mcangle_it 1.308 r_mcbond_it 0.79 r_nbtor_refined 0.304 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.187 r_xyhbond_nbd_refined 0.145 r_symmetry_hbond_refined 0.12 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9596 Nucleic Acid Atoms Solvent Atoms 766 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement