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CRYSTAL STRUCTURE OF RHOGDI E154A,E155A MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BXW PDB ENTRY 2BXW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 2.0 M AMMONIUM SULFATE 0.2 M SODIUM CHLORIDE 0.1 M SODIUM CACODYLATE PH 6.5
Crystal Properties Matthews coefficient Solvent content 4.45 72.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.687 α = 90 b = 130.889 β = 90.94 c = 92.822 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 94.4 0.11 10.3 3.3 87249
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 99.8 0.39 2.6 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BXW 2.07 92.85 84379 1373 90 0.212 0.211 0.2143 0.257 0.2567 RANDOM 27.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 -1.32 -0.54 -1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.484 r_dihedral_angle_4_deg 20.745 r_dihedral_angle_3_deg 19.706 r_dihedral_angle_1_deg 8.634 r_scangle_it 5.659 r_scbond_it 4.261 r_angle_refined_deg 2.643 r_mcangle_it 2.387 r_mcbond_it 2.03 r_angle_other_deg 1.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.484 r_dihedral_angle_4_deg 20.745 r_dihedral_angle_3_deg 19.706 r_dihedral_angle_1_deg 8.634 r_scangle_it 5.659 r_scbond_it 4.261 r_angle_refined_deg 2.643 r_mcangle_it 2.387 r_mcbond_it 2.03 r_angle_other_deg 1.332 r_symmetry_vdw_other 0.255 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.224 r_nbd_other 0.222 r_symmetry_vdw_refined 0.218 r_nbtor_refined 0.195 r_symmetry_hbond_refined 0.187 r_chiral_restr 0.166 r_nbtor_other 0.107 r_bond_refined_d 0.037 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6612 Nucleic Acid Atoms Solvent Atoms 533 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing