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X-ray crystal structure of a cohesin-like module from Clostridium perfringens
Crystallization Crystal Properties Matthews coefficient Solvent content 2.86 56.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.776 α = 90 b = 106.776 β = 90 c = 221.309 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 99.9 0.07 13.6 6.2 16275 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 99 0.42 3.9 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 20 16275 866 99.9 0.235 0.232 0.2273 0.295 0.2844 RANDOM 42.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.39 -0.7 -1.39 2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.945 r_scangle_it 1.679 r_angle_refined_deg 1.077 r_scbond_it 0.892 r_mcangle_it 0.68 r_mcbond_it 0.356 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.178 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.143
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.945 r_scangle_it 1.679 r_angle_refined_deg 1.077 r_scbond_it 0.892 r_mcangle_it 0.68 r_mcbond_it 0.356 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.178 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2951 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling PHASER phasing