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Crystal structure of mouse acetylcholinesterase inhibited by non-aged fenamiphos
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J06 PDB ENTRY 1J06
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 28% PEG750MME, 0.1M HEPES PH7.0, pH 7.00
Crystal Properties Matthews coefficient Solvent content 3.8 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.06 α = 90 b = 111.73 β = 90 c = 224.46 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2006-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 99.6 0.08 20.2 7.4 69500
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.63 98.8 0.48 4.6 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J06 2.5 19.73 68027 1384 99.9 0.215 0.214 0.2064 0.253 0.2392 RANDOM 43.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.053 r_dihedral_angle_4_deg 18.773 r_dihedral_angle_3_deg 16.697 r_dihedral_angle_1_deg 6.244 r_scangle_it 2.514 r_scbond_it 1.635 r_angle_refined_deg 1.315 r_mcangle_it 1.199 r_mcbond_it 0.679 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.053 r_dihedral_angle_4_deg 18.773 r_dihedral_angle_3_deg 16.697 r_dihedral_angle_1_deg 6.244 r_scangle_it 2.514 r_scbond_it 1.635 r_angle_refined_deg 1.315 r_mcangle_it 1.199 r_mcbond_it 0.679 r_nbtor_refined 0.316 r_symmetry_hbond_refined 0.255 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.201 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.093 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8364 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling CCP4 phasing