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CRYSTAL STRUCTURE OF HUMAN STE20-LIKE KINASE (DIPHOSPHORYLATED FORM) BOUND TO 5- AMINO-3-((4-(AMINOSULFONYL)PHENYL)AMINO)-N-(2,6- DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J51 PDB ENTRY 2J51
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 18% PEG3350,10% ETHYLENE GLYCOL, 0.15 KSCN, 0.1M BISTRIS PROPANE PH6.5, pH 6.50
Crystal Properties Matthews coefficient Solvent content 3.53 65.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.368 α = 90 b = 101.368 β = 90 c = 177.238 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 49 99.5 0.09 13 5.9 27969 49.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 97.3 0.71 2 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J51 2.2 50 26523 1377 99.4 0.205 0.203 0.2019 0.242 0.2364 RANDOM 43.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.03 0.06 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.641 r_dihedral_angle_4_deg 20.231 r_dihedral_angle_3_deg 13.239 r_dihedral_angle_1_deg 6.18 r_scangle_it 2.481 r_scbond_it 1.594 r_angle_refined_deg 1.548 r_angle_other_deg 1.156 r_mcangle_it 0.958 r_mcbond_it 0.529
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.641 r_dihedral_angle_4_deg 20.231 r_dihedral_angle_3_deg 13.239 r_dihedral_angle_1_deg 6.18 r_scangle_it 2.481 r_scbond_it 1.594 r_angle_refined_deg 1.548 r_angle_other_deg 1.156 r_mcangle_it 0.958 r_mcbond_it 0.529 r_symmetry_vdw_other 0.296 r_symmetry_vdw_refined 0.267 r_nbd_refined 0.195 r_nbd_other 0.192 r_symmetry_hbond_refined 0.178 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.138 r_nbtor_other 0.093 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2274 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling