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Xray structure of E. coli YiiU
Crystallization Crystal Properties Matthews coefficient Solvent content 3.25 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.386 α = 104.73 b = 40.777 β = 97.03 c = 80.134 γ = 93.56
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 95.5 0.06 12.1 3.8 11163
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 95.5 0.36 2.7 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.8 76.7 10917 577 95.5 0.31 0.31 0.3069 0.321 RANDOM 108.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.11 -0.92 -0.01 15.15 -3.61 -12.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 48.895 r_dihedral_angle_3_deg 23.281 r_dihedral_angle_4_deg 21.744 r_dihedral_angle_1_deg 7.559 r_mcangle_it 1.864 r_scangle_it 1.815 r_angle_refined_deg 1.77 r_scbond_it 1.146 r_mcbond_it 1.109 r_symmetry_vdw_refined 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 48.895 r_dihedral_angle_3_deg 23.281 r_dihedral_angle_4_deg 21.744 r_dihedral_angle_1_deg 7.559 r_mcangle_it 1.864 r_scangle_it 1.815 r_angle_refined_deg 1.77 r_scbond_it 1.146 r_mcbond_it 1.109 r_symmetry_vdw_refined 0.5 r_nbtor_refined 0.307 r_nbd_refined 0.266 r_symmetry_hbond_refined 0.244 r_xyhbond_nbd_refined 0.208 r_chiral_restr 0.107 r_bond_refined_d 0.02 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2604 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXD phasing SHARP phasing REFMAC refinement