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Structure of a beta-mannosidase from Bacteroides thetaiotaomicron
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.15-0.35 M NABR, 6-12% W/V PEG 3350 AND 0.1 M BIS TRIS PROPANE PH7 OR 0.08-0.2 M KSCN 8-15% W/V PEG 3350 AND 0.1 M BIS TRIS PROPANE, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.16 42.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.463 α = 90 b = 115.997 β = 113.42 c = 99.146 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRRORS 2005-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 39.56 100 0.06 15.3 4.1 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.27 5.3 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 39.56 197589 10324 100 0.157 0.155 0.1534 0.188 0.1871 RANDOM 17.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.12 0.04 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.41 r_dihedral_angle_4_deg 19.426 r_dihedral_angle_3_deg 12.614 r_dihedral_angle_1_deg 6.626 r_scangle_it 4.056 r_scbond_it 2.671 r_angle_refined_deg 1.651 r_mcangle_it 1.564 r_mcbond_it 1.434 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.41 r_dihedral_angle_4_deg 19.426 r_dihedral_angle_3_deg 12.614 r_dihedral_angle_1_deg 6.626 r_scangle_it 4.056 r_scbond_it 2.671 r_angle_refined_deg 1.651 r_mcangle_it 1.564 r_mcbond_it 1.434 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.204 r_chiral_restr 0.161 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.134 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13693 Nucleic Acid Atoms Solvent Atoms 1856 Heterogen Atoms 115
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXD phasing MLPHARE phasing REFMAC refinement