2JDT

Structure of PKA-PKB chimera complexed with ISOQUINOLINE-5-SULFONIC ACID (2-(2-(4-CHLOROBENZYLOXY) ETHYLAMINO)ETHYL)AMIDE


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1YDSPDB ENTRY 1YDS

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.4248.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.863α = 90
b = 75.563β = 90
c = 80.097γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1543.9990.088.5423262
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.152.231000.362.64

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1YDS2.1543.8823262121799.30.2030.20.259RANDOM28.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.531.06-1.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.068
r_dihedral_angle_3_deg15.96
r_dihedral_angle_4_deg14.524
r_dihedral_angle_1_deg5.908
r_angle_refined_deg1.342
r_angle_other_deg0.87
r_symmetry_vdw_other0.223
r_nbd_refined0.202
r_nbd_other0.193
r_nbtor_refined0.184
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.068
r_dihedral_angle_3_deg15.96
r_dihedral_angle_4_deg14.524
r_dihedral_angle_1_deg5.908
r_angle_refined_deg1.342
r_angle_other_deg0.87
r_symmetry_vdw_other0.223
r_nbd_refined0.202
r_nbd_other0.193
r_nbtor_refined0.184
r_xyhbond_nbd_refined0.118
r_scangle_it0.096
r_nbtor_other0.088
r_chiral_restr0.083
r_mcangle_it0.079
r_scbond_it0.075
r_mcbond_it0.061
r_symmetry_hbond_refined0.051
r_symmetry_vdw_refined0.049
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2935
Nucleic Acid Atoms
Solvent Atoms294
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement