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crystal structure of HapK from Hahella chejuensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.8 M AMMONIUM SULFATE, 7% ISOPROPANOL, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.7 53.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.306 α = 90 b = 58.306 β = 90 c = 137.882 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 100 0.08 44 11 35383 8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.29 8.6 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2 28.52 16842 918 100 0.191 0.189 0.1919 0.223 0.2269 RANDOM 28.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.343 r_dihedral_angle_4_deg 13.196 r_dihedral_angle_3_deg 12.64 r_dihedral_angle_1_deg 5.773 r_scangle_it 2.926 r_scbond_it 1.907 r_angle_refined_deg 1.305 r_mcangle_it 1.203 r_mcbond_it 0.831 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.343 r_dihedral_angle_4_deg 13.196 r_dihedral_angle_3_deg 12.64 r_dihedral_angle_1_deg 5.773 r_scangle_it 2.926 r_scbond_it 1.907 r_angle_refined_deg 1.305 r_mcangle_it 1.203 r_mcbond_it 0.831 r_nbtor_refined 0.302 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.205 r_symmetry_hbond_refined 0.161 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1640 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing