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Glyphosate N-acetyltransferase bound to acetyl COA and 3-phosphoglycerate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BSW PDB ENTRY 2BSW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 100 MM SODIUM ACETATE, PH 4.6 150-300 MM AMMONIUM SULFATE 20-25% PEG4000 2 MM ACETYL COA 20 MM D-3-PHOSPHOGLYCERATE
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.828 α = 90 b = 48.448 β = 103.57 c = 46.798 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 45.6 98.7 0.03 41.1 3.3 19905
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 89.6 0.11 8.3 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 2BSW 1.6 45.64 18899 1014 100 0.157 0.155 0.1675 0.193 0.204 RANDOM 13.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.11 -0.09 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.387 r_dihedral_angle_4_deg 12.774 r_dihedral_angle_3_deg 11.476 r_dihedral_angle_1_deg 6.049 r_sphericity_free 5.577 r_scangle_it 3.078 r_scbond_it 2.397 r_sphericity_bonded 2.023 r_mcangle_it 1.61 r_angle_refined_deg 1.448
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.387 r_dihedral_angle_4_deg 12.774 r_dihedral_angle_3_deg 11.476 r_dihedral_angle_1_deg 6.049 r_sphericity_free 5.577 r_scangle_it 3.078 r_scbond_it 2.397 r_sphericity_bonded 2.023 r_mcangle_it 1.61 r_angle_refined_deg 1.448 r_mcbond_it 1.374 r_rigid_bond_restr 1.289 r_angle_other_deg 0.776 r_mcbond_other 0.401 r_symmetry_vdw_other 0.304 r_nbd_refined 0.199 r_nbd_other 0.198 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.161 r_symmetry_hbond_refined 0.13 r_nbtor_other 0.083 r_chiral_restr 0.082 r_symmetry_vdw_refined 0.055 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1161 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling