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Structure of a pectin binding carbohydrate binding module determined in an orthorhombic crystal form.
Crystallization Crystal Properties Matthews coefficient Solvent content 2.06 39.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.765 α = 90 b = 42.63 β = 90 c = 98.681 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 96.2 0.08 20.3 14 12978 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 53.5 0.35 6.8 13.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 20 12978 680 96.2 0.175 0.172 0.1808 0.24 0.2456 RANDOM 19.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.71 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 20.474 r_scangle_it 4.791 r_scbond_it 3.098 r_angle_refined_deg 1.875 r_mcangle_it 1.871 r_mcbond_it 1.034 r_angle_other_deg 0.963 r_symmetry_vdw_other 0.303 r_nbd_other 0.264 r_xyhbond_nbd_refined 0.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 20.474 r_scangle_it 4.791 r_scbond_it 3.098 r_angle_refined_deg 1.875 r_mcangle_it 1.871 r_mcbond_it 1.034 r_angle_other_deg 0.963 r_symmetry_vdw_other 0.303 r_nbd_other 0.264 r_xyhbond_nbd_refined 0.244 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.195 r_chiral_restr 0.128 r_nbtor_other 0.098 r_symmetry_vdw_refined 0.025 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1072 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOLREP phasing