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Sky1p bound to Npl3p-derived substrate peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HOW PDB ENTRY 1HOW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.5M AMMONIUM SULFATE, 10% ETHYLENE GLYCOL, 10 MM SODIUM ACETATE PH 4.5
Crystal Properties Matthews coefficient Solvent content 2.5 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.328 α = 90 b = 88.558 β = 90 c = 134.408 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-05-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 99.4 0.1 8.7 3.5 30449 23.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 98.6 0.53 2.6 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HOW 2.5 19.99 2 25101 1224 82.3 0.21 0.21 0.2237 0.255 0.2632 RANDOM 34.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.69 -5.28 1.59
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22 c_scangle_it 3.98 c_scbond_it 3.05 c_mcangle_it 2.22 c_mcbond_it 1.32 c_angle_deg 1.2 c_improper_angle_d 0.74 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22 c_scangle_it 3.98 c_scbond_it 3.05 c_mcangle_it 2.22 c_mcbond_it 1.32 c_angle_deg 1.2 c_improper_angle_d 0.74 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5775 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 12
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing