☰ Navigation Tabs
Crystal structure of the streptomyces coelicolor holo- [Acyl-carrier-protein] Synthase (AcpS) at 2 A.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F7T PDB ENTRY 1F7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.8 ACPS WAS DIALYZED IN 50 MM TRIS PH 8.8, 10% GLYCEROL. THEN IT WAS CRYSTALLIZED IN 0.2M AMMONIUM SULPHATE, 0.1M NACACODYLATE PH 6.5, 30% PEG8000
Crystal Properties Matthews coefficient Solvent content 2.04 39.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.94 α = 90 b = 75.94 β = 90 c = 108.351 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 50 99.3 0.08 22.19 6.4 25759 29.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.05 95.7 0.38 2.04 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1F7T 1.98 65.8 24295 1305 99.4 0.18 0.178 0.1818 0.22 0.2282 RANDOM 39.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.13 0.26 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.129 r_dihedral_angle_4_deg 17.032 r_dihedral_angle_3_deg 14.149 r_dihedral_angle_1_deg 9.519 r_scangle_it 8.205 r_scbond_it 5.29 r_mcangle_it 2.726 r_angle_refined_deg 1.69 r_mcbond_it 1.55 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.129 r_dihedral_angle_4_deg 17.032 r_dihedral_angle_3_deg 14.149 r_dihedral_angle_1_deg 9.519 r_scangle_it 8.205 r_scbond_it 5.29 r_mcangle_it 2.726 r_angle_refined_deg 1.69 r_mcbond_it 1.55 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.21 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.114 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2661 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement