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Structure of deoxyadenosine kinase from M. mycoides with bound dCTP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 20% PEG 3350 0.2M AMF, pH 6.20
Crystal Properties Matthews coefficient Solvent content 2.2 42.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.527 α = 90 b = 84.527 β = 90 c = 53.603 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRROR 2006-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 43.25 99.9 0.08 15.6 4.3 18856 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 99.3 0.28 5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 20 18004 978 99.9 0.234 0.233 0.2347 0.263 RANDOM 26.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.06 0.11 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.319 r_dihedral_angle_4_deg 27.34 r_dihedral_angle_3_deg 16.551 r_dihedral_angle_1_deg 5.207 r_scangle_it 2.122 r_scbond_it 1.325 r_angle_refined_deg 1.227 r_mcangle_it 1.003 r_mcbond_it 0.596 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.319 r_dihedral_angle_4_deg 27.34 r_dihedral_angle_3_deg 16.551 r_dihedral_angle_1_deg 5.207 r_scangle_it 2.122 r_scbond_it 1.325 r_angle_refined_deg 1.227 r_mcangle_it 1.003 r_mcbond_it 0.596 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.273 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.098 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3149 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing