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blLAP in Complex with Microginin FR1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BLL PDB ENTRY 1BLL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 HANGING DROP BLLAP 7MG/ML IN 50MM TRIS-HCL PH7.8, 50UM ZNSO4, 200MM NACL EQUILIBRATED AGAINST 50MM TRIS-HCL PH7.8, 50UM ZNSO4, 200MM NACL, 50% MPD, pH 7.80
Crystal Properties Matthews coefficient Solvent content 2.8 0.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.982 α = 90 b = 129.982 β = 90 c = 120.813 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 35 99.4 0.07 19 6 62705 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.8 98.1 0.47 3.5 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BLL 1.73 35 59562 3135 99.4 0.146 0.145 0.1447 0.173 0.1746 RANDOM 18.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.18 -0.37 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.352 r_dihedral_angle_4_deg 17.471 r_dihedral_angle_3_deg 12.888 r_dihedral_angle_1_deg 6 r_scangle_it 5.273 r_scbond_it 3.501 r_mcangle_it 2.02 r_angle_refined_deg 1.59 r_mcbond_it 1.389 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.352 r_dihedral_angle_4_deg 17.471 r_dihedral_angle_3_deg 12.888 r_dihedral_angle_1_deg 6 r_scangle_it 5.273 r_scbond_it 3.501 r_mcangle_it 2.02 r_angle_refined_deg 1.59 r_mcbond_it 1.389 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.209 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3746 Nucleic Acid Atoms Solvent Atoms 506 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling