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Structure of PBP-A acyl-enzyme complex with penicillin-G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 HANGING DROP. PROTEIN 7 MG/ML. RESERVOIR 500 UL HEPES 0.1M PH 7.5, AMMONIUM ACETATE 0.2M, PEG-3350 25% AND NAN3 0.02% (W/V). DROP 1 UL PROTEIN AND 1 UL RESERVOIR
Crystal Properties Matthews coefficient Solvent content 2.27 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.692 α = 90 b = 91.873 β = 90 c = 147.44 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH RH COATED, ZERODUR, VERTICALLY FOCUSSING 2004-12-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 24 96.7 0.05 17 3.34 91292 30.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 88.2 0.52 2.6 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.9 24 86685 4607 96.7 0.19 0.187 0.1932 0.245 RANDOM 20.13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.86 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.617 r_dihedral_angle_4_deg 22.424 r_dihedral_angle_3_deg 14.61 r_dihedral_angle_1_deg 5.975 r_scangle_it 2.957 r_scbond_it 2.04 r_angle_refined_deg 1.58 r_angle_other_deg 1.054 r_mcangle_it 1.036 r_mcbond_it 0.889
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.617 r_dihedral_angle_4_deg 22.424 r_dihedral_angle_3_deg 14.61 r_dihedral_angle_1_deg 5.975 r_scangle_it 2.957 r_scbond_it 2.04 r_angle_refined_deg 1.58 r_angle_other_deg 1.054 r_mcangle_it 1.036 r_mcbond_it 0.889 r_symmetry_vdw_other 0.343 r_nbd_refined 0.213 r_nbd_other 0.198 r_xyhbond_nbd_refined 0.189 r_symmetry_hbond_refined 0.18 r_symmetry_vdw_refined 0.178 r_nbtor_refined 0.165 r_chiral_restr 0.091 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8210 Nucleic Acid Atoms Solvent Atoms 823 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling