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B116 of Sulfolobus turreted icosahedral virus (STIV)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 290 6.5 MG/ML PROTEIN WAS CRYSTALLIZED BY HANGING DROP VAPOR DIFFUSION IN 0.1 M TRIS-HCL (PH 8.0), 1.95 M NH4H2PO4 AT 17 DEGREES C.
Crystal Properties Matthews coefficient Solvent content 3.3 62.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.573 α = 90 b = 83.317 β = 90 c = 89.501 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 MIRRORS 2004-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 99.9 0.07 22 5.1 14911 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 100 0.26 5 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.39 29.81 14067 758 99.3 0.21 0.208 0.24 0.2595 RANDOM 28.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.13 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.727 r_dihedral_angle_3_deg 14.992 r_dihedral_angle_4_deg 14.28 r_dihedral_angle_1_deg 6.26 r_scangle_it 3.142 r_scbond_it 2.048 r_mcangle_it 1.393 r_angle_refined_deg 1.352 r_mcbond_it 1.052 r_angle_other_deg 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.727 r_dihedral_angle_3_deg 14.992 r_dihedral_angle_4_deg 14.28 r_dihedral_angle_1_deg 6.26 r_scangle_it 3.142 r_scbond_it 2.048 r_mcangle_it 1.393 r_angle_refined_deg 1.352 r_mcbond_it 1.052 r_angle_other_deg 0.83 r_symmetry_vdw_refined 0.356 r_nbd_refined 0.193 r_nbd_other 0.185 r_symmetry_vdw_other 0.181 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.12 r_nbtor_other 0.086 r_chiral_restr 0.074 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1878 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing