☰ Navigation Tabs
E. coli P Pilus chaperone PapD in complex with a pilus biogenesis inhibitor, pilicide 2c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QPP PDB ENTRY 1QPP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 16 % PEG 4000, 100MM TRIS HCL PH 8.5 AND 200 MM LI2SO4
Crystal Properties Matthews coefficient Solvent content 3.19 61.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.315 α = 90 b = 94.315 β = 90 c = 121.992 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 99.9 0.09 23.4 13.7 20651 50.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 100 0.43 7.1 14.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QPP 2.6 15 9815 512 95.1 0.2324 0.2324 0.2295 0.2726 0.2678 RANDOM 54.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -14.926 -7.157 -14.926 29.852
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.244 c_mcangle_it 2.477 c_scbond_it 2.051 c_mcbond_it 1.44 c_angle_deg 1.25549 c_bond_d 0.008812 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.244 c_mcangle_it 2.477 c_scbond_it 2.051 c_mcbond_it 1.44 c_angle_deg 1.25549 c_bond_d 0.008812 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1664 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 34
Software Software Software Name Purpose CNS refinement MOSFLM data reduction SCALA data scaling AMoRE phasing